CardinalWorkflows

This package is for version 3.16 of Bioconductor; for the stable, up-to-date release version, see CardinalWorkflows.

Datasets and workflows for the Cardinal mass spectrometry imaging package

Bioconductor version: 3.16

Datasets and workflows for Cardinal: DESI and MALDI examples including pig fetus, cardinal painting, and human RCC.

Author: Kylie A. Bemis <k.bemis at northeastern.edu>

Maintainer: Kylie A. Bemis <k.bemis at northeastern.edu>

Citation (from within R, enter citation("CardinalWorkflows")):

To install this package, start R (version "4.2") and enter:


if (!require("BiocManager", quietly = TRUE))
 install.packages("BiocManager")
BiocManager::install("CardinalWorkflows")

For older versions of R, please refer to the appropriate Bioconductor release.

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("CardinalWorkflows")

1. Segmentation: Unsupervised analysis workflow HTML R Script

2. Classification: Supervised analysis workflow HTML R Script

3. Class comparision: Statistical testing workflow HTML R Script

Reference Manual PDF

NEWS Text

Version 1.30.0

License Artistic-2.0

Depends R (>= 2.10), Cardinal

Imports

System Requirements

URL

Suggests BiocStyle, knitr, rmarkdown

Linking To

Enhances

Depends On Me

Imports Me

Suggests Me

Links To Me

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Follow Installation instructions to use this package in your R session.

Windows Binary

macOS Binary (x86_64)

macOS Binary (arm64)

Source Repository git clone https://git.bioconductor.org/packages/CardinalWorkflows

Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/CardinalWorkflows

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