yamss

This package is for version 3.16 of Bioconductor; for the stable, up-to-date release version, see yamss.

Tools for high-throughput metabolomics

Bioconductor version: 3.16

Tools to analyze and visualize high-throughput metabolomics data aquired using chromatography-mass spectrometry. These tools preprocess data in a way that enables reliable and powerful differential analysis.

Author: Leslie Myint [cre, aut], Kasper Daniel Hansen [aut]

Maintainer: Leslie Myint <leslie.myint at gmail.com>

Citation (from within R, enter citation("yamss")):

Installation

To install this package, start R (version "4.2") and enter:


if (!require("BiocManager", quietly = TRUE))
 install.packages("BiocManager")
BiocManager::install("yamss")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("yamss")

yamss User's Guide HTML R Script

Reference Manual PDF

NEWS Text

Need some help? Ask on the Bioconductor Support site!

Details

biocViews ImmunoOncology, MassSpectrometry, Metabolomics, Software

Version 1.24.0

In Bioconductor since BioC 3.4 (R-3.3) (7.5 years)

License Artistic-2.0

Depends R (>= 3.5.0), methods, BiocGenerics(>= 0.15.3), SummarizedExperiment

Imports IRanges, stats, S4Vectors, EBImage, Matrix, mzR, data.table, grDevices, limma

System Requirements

URL https://github.com/hansenlab/yamss

Bug Reports https://github.com/hansenlab/yamss/issues

Suggests BiocStyle, knitr, rmarkdown, digest, mtbls2, testthat

Linking To

Enhances

Depends On Me

Imports Me

Suggests Me

Links To Me

Build Report Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package yamss_1.24.0.tar.gz

Windows Binary yamss_1.24.0.zip (64-bit only)

macOS Binary (x86_64) yamss_1.24.0.tgz

macOS Binary (arm64) yamss_1.24.0.tgz

Source Repository git clone https://git.bioconductor.org/packages/yamss

Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/yamss

Bioc Package Browser https://code.bioconductor.org/browse/yamss/

Package Short Url https://bioconductor.org/packages/yamss/

Package Downloads Report Download Stats

Old Source Packages for BioC 3.16 Source Archive