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trackViewer
This package is for version 3.16 of Bioconductor; for the stable, up-to-date release version, see trackViewer.
A R/Bioconductor package with web interface for drawing elegant interactive tracks or lollipop plot to facilitate integrated analysis of multi-omics data
Bioconductor version: 3.16
Visualize mapped reads along with annotation as track layers for NGS dataset such as ChIP-seq, RNA-seq, miRNA-seq, DNA-seq, SNPs and methylation data.
Author: Jianhong Ou [aut, cre] , Julie Lihua Zhu [aut]
Maintainer: Jianhong Ou <jianhong.ou at duke.edu>
Citation (from within R, enter
citation("trackViewer")):
Installation
To install this package, start R (version "4.2") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("trackViewer")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("trackViewer")
Reference Manual
PDF
NEWS
Text
Details
biocViews
Software, Visualization
Version
1.34.0
In Bioconductor since
BioC 2.14 (R-3.1) (10 years)
License
GPL (>= 2)
Depends
R (>= 3.5.0), grDevices, methods, GenomicRanges, grid, Rcpp
Imports
GenomeInfoDb, GenomicAlignments, GenomicFeatures, Gviz, Rsamtools, S4Vectors, rtracklayer, BiocGenerics, scales, tools, IRanges, AnnotationDbi, grImport, htmlwidgets, plotrix, Rgraphviz, InteractionSet, graph, utils, rhdf5
System Requirements
See More
Suggests
biomaRt, TxDb.Hsapiens.UCSC.hg19.knownGene, RUnit, org.Hs.eg.db, BiocStyle, knitr, VariantAnnotation, httr, htmltools, rmarkdown, motifStack
Linking To
Rcpp
Enhances
Depends On Me
Imports Me
NADfinder
Suggests Me
ATACseqQC, ChIPpeakAnno
Links To Me
Build Report
Build Report
Package Archives
Follow Installation instructions to use this package in your R session.
Source Package
trackViewer_1.34.0.tar.gz
Windows Binary
trackViewer_1.34.0.zip
macOS Binary (x86_64)
trackViewer_1.34.0.tgz
macOS Binary (arm64)
trackViewer_1.34.0.tgz
Source Repository
git clone https://git.bioconductor.org/packages/trackViewer
Source Repository (Developer Access)
git clone git@git.bioconductor.org:packages/trackViewer
Bioc Package Browser
https://code.bioconductor.org/browse/trackViewer/
Package Short Url
https://bioconductor.org/packages/trackViewer/
Package Downloads Report
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Old Source Packages for BioC 3.16
Source Archive