scuttle

This package is for version 3.16 of Bioconductor; for the stable, up-to-date release version, see scuttle.

Single-Cell RNA-Seq Analysis Utilities

Installation

To install this package, start R (version "4.2") and enter:

if (!require("BiocManager", quietly = TRUE))
 install.packages("BiocManager")
BiocManager::install("scuttle")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("scuttle")

Details

See More

Suggests BiocStyle, knitr, scRNAseq, rmarkdown, testthat, scran

Linking To Rcpp, beachmat

Enhances

Depends On Me scater, scran

Imports Me BASiCS, BASiCStan, batchelor, DropletUtils, FLAMES, imcRtools, mia, mumosa, muscat, scDblFinder, singleCellTK, spatialHeatmap, spatialLIBD, velociraptor

Suggests Me bluster, HCAData, miloR, MouseThymusAgeing, SingleR, splatter, TSCAN

Links To Me DropletUtils, scran

Build Report Build Report

Package Archives

Follow Installation instructions to use this package in your R session.