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regioneReloaded
This package is for version 3.16 of Bioconductor; for the stable, up-to-date release version, see regioneReloaded.
RegioneReloaded: Multiple Association for Genomic Region Sets
Bioconductor version: 3.16
RegioneReloaded is a package that allows simultaneous analysis of associations between genomic region sets, enabling clustering of data and the creation of ready-to-publish graphs. It takes over and expands on all the features of its predecessor regioneR. It also incorporates a strategy to improve p-value calculations and normalize z-scores coming from multiple analysis to allow for their direct comparison. RegioneReloaded builds upon regioneR by adding new plotting functions for obtaining publication-ready graphs.
Author: Roberto Malinverni [aut, cre] , David Corujo [aut], Bernat Gel [aut]
Maintainer: Roberto Malinverni <roberto.malinverni at gmail.com>
citation("regioneReloaded")):
Installation
To install this package, start R (version "4.2") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("regioneReloaded")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("regioneReloaded")
Details
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Package Archives
Follow Installation instructions to use this package in your R session.