netboost

This package is for version 3.16 of Bioconductor; for the stable, up-to-date release version, see netboost.

Network Analysis Supported by Boosting

Bioconductor version: 3.16

Boosting supported network analysis for high-dimensional omics applications. This package comes bundled with the MC-UPGMA clustering package by Yaniv Loewenstein.

Author: Pascal Schlosser [aut, cre], Jochen Knaus [aut, ctb], Yaniv Loewenstein [aut]

Maintainer: Pascal Schlosser <pascal.schlosser at uniklinik-freiburg.de>

Citation (from within R, enter citation("netboost")):

Installation

To install this package, start R (version "4.2") and enter:


if (!require("BiocManager", quietly = TRUE))
 install.packages("BiocManager")
BiocManager::install("netboost")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("netboost")

The Netboost users guide HTML R Script

Reference Manual PDF

NEWS Text

Need some help? Ask on the Bioconductor Support site!

Details

biocViews BiomedicalInformatics, Clustering, DimensionReduction, Epigenetics, GraphAndNetwork, Metabolomics, Network, Software, StatisticalMethod, Transcriptomics

Version 2.6.1

In Bioconductor since BioC 3.9 (R-3.6) (5 years)

License GPL-3

Depends R (>= 4.0.0)

Imports Rcpp, RcppParallel, parallel, grDevices, graphics, stats, utils, dynamicTreeCut, WGCNA, impute, colorspace, methods, R.utils

System Requirements GNU make, Bash, Perl, Gzip

URL https://bioconductor.org/packages/release/bioc/html/netboost.html

Bug Reports pascal.schlosser@uniklinik-freiburg.de

Suggests knitr, markdown, rmarkdown

Linking To Rcpp, RcppParallel

Enhances

Depends On Me

Imports Me

Suggests Me

Links To Me

Build Report Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package netboost_2.6.1.tar.gz

Windows Binary

macOS Binary (x86_64) netboost_2.6.1.tgz

macOS Binary (arm64) netboost_2.6.1.tgz

Source Repository git clone https://git.bioconductor.org/packages/netboost

Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/netboost

Bioc Package Browser https://code.bioconductor.org/browse/netboost/

Package Short Url https://bioconductor.org/packages/netboost/

Package Downloads Report Download Stats

Old Source Packages for BioC 3.16 Source Archive