graphite

This package is for version 3.16 of Bioconductor; for the stable, up-to-date release version, see graphite.

GRAPH Interaction from pathway Topological Environment

Bioconductor version: 3.16

Graph objects from pathway topology derived from KEGG, Panther, PathBank, PharmGKB, Reactome SMPDB and WikiPathways databases.

Author: Gabriele Sales [cre], Enrica Calura [aut], Chiara Romualdi [aut]

Maintainer: Gabriele Sales <gabriele.sales at unipd.it>

Citation (from within R, enter citation("graphite")):

To install this package, start R (version "4.2") and enter:


if (!require("BiocManager", quietly = TRUE))
 install.packages("BiocManager")
BiocManager::install("graphite")

For older versions of R, please refer to the appropriate Bioconductor release.

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("graphite")

GRAPH Interaction from pathway Topological Environment PDF R Script

metabolites.pdf PDF

Reference Manual PDF

NEWS Text

Version 1.44.0

In Bioconductor since BioC 2.9 (R-2.14) (12.5 years)

License AGPL-3

Depends R (>= 4.2), methods

Imports AnnotationDbi, graph(>= 1.67.1), httr, rappdirs, stats, utils, graphics, rlang, purrr

System Requirements

Suggests checkmate, a4Preproc, ALL, BiocStyle, clipper, codetools, hgu133plus2.db, hgu95av2.db, impute, knitr, org.Hs.eg.db, parallel, R.rsp, RCy3, rmarkdown, SPIA(>= 2.2), testthat, topologyGSA (>= 1.4.0)

Linking To

Enhances

Depends On Me PoTRA

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Follow Installation instructions to use this package in your R session.

Source Package graphite_1.44.0.tar.gz

Windows Binary graphite_1.44.0.zip

macOS Binary (x86_64) graphite_1.44.0.tgz

macOS Binary (arm64) graphite_1.44.0.tgz

Source Repository git clone https://git.bioconductor.org/packages/graphite

Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/graphite

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Old Source Packages for BioC 3.16 Source Archive