aroma.light

This package is for version 3.16 of Bioconductor; for the stable, up-to-date release version, see aroma.light.

Light-Weight Methods for Normalization and Visualization of Microarray Data using Only Basic R Data Types

Bioconductor version: 3.16

Methods for microarray analysis that take basic data types such as matrices and lists of vectors. These methods can be used standalone, be utilized in other packages, or be wrapped up in higher-level classes.

Author: Henrik Bengtsson [aut, cre, cph], Pierre Neuvial [ctb], Aaron Lun [ctb]

Maintainer: Henrik Bengtsson <henrikb at braju.com>

Citation (from within R, enter citation("aroma.light")):

Installation

To install this package, start R (version "4.2") and enter:


if (!require("BiocManager", quietly = TRUE))
 install.packages("BiocManager")
BiocManager::install("aroma.light")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

Reference Manual PDF

NEWS Text

Need some help? Ask on the Bioconductor Support site!

Details

biocViews Infrastructure, Microarray, MultiChannel, OneChannel, Preprocessing, Software, TwoChannel, Visualization

Version 3.28.0

In Bioconductor since BioC 1.9 (R-2.4) (17.5 years)

License GPL (>= 2)

Depends R (>= 2.15.2)

Imports stats, R.methodsS3 (>= 1.7.1), R.oo (>= 1.23.0), R.utils (>= 2.9.0), matrixStats (>= 0.55.0)

System Requirements

URL https://github.com/HenrikBengtsson/aroma.light https://www.aroma-project.org

Bug Reports https://github.com/HenrikBengtsson/aroma.light/issues

Suggests princurve (>= 2.1.4)

Linking To

Enhances

Depends On Me

Imports Me EDASeq, scone

Suggests Me TIN

Links To Me

Build Report Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package aroma.light_3.28.0.tar.gz

Windows Binary aroma.light_3.28.0.zip

macOS Binary (x86_64) aroma.light_3.28.0.tgz

macOS Binary (arm64) aroma.light_3.28.0.tgz

Source Repository git clone https://git.bioconductor.org/packages/aroma.light

Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/aroma.light

Bioc Package Browser https://code.bioconductor.org/browse/aroma.light/

Package Short Url https://bioconductor.org/packages/aroma.light/

Package Downloads Report Download Stats

Old Source Packages for BioC 3.16 Source Archive