- Home
- Bioconductor 3.16
- Software Packages
- TimiRGeN
TimiRGeN
This package is for version 3.16 of Bioconductor; for the stable, up-to-date release version, see TimiRGeN.
Time sensitive microRNA-mRNA integration, analysis and network generation tool
Bioconductor version: 3.16
TimiRGeN (Time Incorporated miR-mRNA Generation of Networks) is a novel R package which functionally analyses and integrates time course miRNA-mRNA differential expression data. This tool can generate small networks within R or export results into cytoscape or pathvisio for more detailed network construction and hypothesis generation. This tool is created for researchers that wish to dive deep into time series multi-omic datasets. TimiRGeN goes further than many other tools in terms of data reduction. Here, potentially hundreds-of-thousands of potential miRNA-mRNA interactions can be whittled down into a handful of high confidence miRNA-mRNA interactions affecting a signalling pathway, across a time course.
Author: Krutik Patel [aut, cre]
Maintainer: Krutik Patel <krutik.patel at newcastle.ac.uk>
citation("TimiRGeN")):
Installation
To install this package, start R (version "4.2") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("TimiRGeN")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("TimiRGeN")
Details
See More
Package Archives
Follow Installation instructions to use this package in your R session.