EGAD

This package is for version 3.16 of Bioconductor; for the stable, up-to-date release version, see EGAD.

Extending guilt by association by degree

Bioconductor version: 3.16

The package implements a series of highly efficient tools to calculate functional properties of networks based on guilt by association methods.

Author: Sara Ballouz [aut, cre], Melanie Weber [aut, ctb], Paul Pavlidis [aut], Jesse Gillis [aut, ctb]

Maintainer: Sara Ballouz <sarahballouz at gmail.com>

Citation (from within R, enter citation("EGAD")):

To install this package, start R (version "4.2") and enter:


if (!require("BiocManager", quietly = TRUE))
 install.packages("BiocManager")
BiocManager::install("EGAD")

For older versions of R, please refer to the appropriate Bioconductor release.

Reference Manual PDF

NEWS Text

Version 1.26.0

In Bioconductor since BioC 3.3 (R-3.3) (8 years)

License GPL-2

Depends R (>= 3.5)

Imports gplots, Biobase, GEOquery, limma, impute, RColorBrewer, zoo, igraph, plyr, MASS, RCurl, methods

System Requirements

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Suggests knitr, testthat, rmarkdown, markdown

Linking To

Enhances

Depends On Me

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Follow Installation instructions to use this package in your R session.

Source Package EGAD_1.26.0.tar.gz

Windows Binary EGAD_1.26.0.zip

macOS Binary (x86_64) EGAD_1.26.0.tgz

macOS Binary (arm64) EGAD_1.26.0.tgz

Source Repository git clone https://git.bioconductor.org/packages/EGAD

Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/EGAD

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Old Source Packages for BioC 3.16 Source Archive