HiContactsData

This package is for version 3.16 of Bioconductor; for the stable, up-to-date release version, see HiContactsData.

HiContacts companion data package

Bioconductor version: 3.16

Provides a collection of Hi-C files (pairs and (m)cool). These datasets can be read into R and further investigated and visualized with the HiContacts package. Data includes yeast Hi-C data generated by the Koszul lab from the Pasteur Institute.

Author: Jacques Serizay [aut, cre]

Maintainer: Jacques Serizay <jacquesserizay at gmail.com>

Citation (from within R, enter citation("HiContactsData")):

Installation

To install this package, start R (version "4.2") and enter:


if (!require("BiocManager", quietly = TRUE))
 install.packages("BiocManager")
BiocManager::install("HiContactsData")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("HiContactsData")

HiContactsData HTML R Script

Reference Manual PDF

LICENSE Text

Need some help? Ask on the Bioconductor Support site!

Details

biocViews ExperimentData, ExperimentHub, SequencingData

Version 1.0.0

License MIT + file LICENSE

Depends ExperimentHub

Imports BiocFileCache, AnnotationHub

System Requirements

URL https://github.com/js2264/HiContactsData

Bug Reports https://github.com/js2264/HiContactsData/issues

Suggests testthat, methods, BiocStyle, knitr, rmarkdown

Linking To

Enhances

Depends On Me

Imports Me HiContacts

Suggests Me

Links To Me

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Package Archives

Follow Installation instructions to use this package in your R session.

Source Package HiContactsData_1.0.0.tar.gz

Windows Binary

macOS Binary (x86_64)

macOS Binary (arm64)

Source Repository git clone https://git.bioconductor.org/packages/HiContactsData

Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/HiContactsData

Package Short Url https://bioconductor.org/packages/HiContactsData/

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