signatureSearchData

This package is for version 3.15 of Bioconductor; for the stable, up-to-date release version, see signatureSearchData.

Datasets for signatureSearch package

Bioconductor version: 3.15

CMAP/LINCS hdf5 databases and other annotations used for signatureSearch software package.

Author: Yuzhu Duan <yduan004 at ucr.edu>, Brendan Gongol <bgong001 at ucr.edu>, Thomas Girke <thomas.girke at ucr.edu>

Maintainer: Brendan Gongol <bgong001 at ucr.edu>

Citation (from within R, enter citation("signatureSearchData")):

To install this package, start R (version "4.2") and enter:


if (!require("BiocManager", quietly = TRUE))
 install.packages("BiocManager")
BiocManager::install("signatureSearchData")

For older versions of R, please refer to the appropriate Bioconductor release.

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("signatureSearchData")

signatureSearchData HTML R Script

Reference Manual PDF

NEWS Text

Version 1.10.0

License Artistic-2.0

Depends R (>= 3.6)

Imports ExperimentHub, utils, affy, limma, Biobase, magrittr, dplyr, R.utils, stats, rhdf5

System Requirements

URL

Suggests knitr, rmarkdown

Linking To

Enhances

Depends On Me

Imports Me

Suggests Me signatureSearch

Links To Me

Build Report Build Report

Follow Installation instructions to use this package in your R session.

Windows Binary

macOS Binary (x86_64)

Source Repository git clone https://git.bioconductor.org/packages/signatureSearchData

Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/signatureSearchData

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