msdata

This package is for version 3.15 of Bioconductor; for the stable, up-to-date release version, see msdata.

Various Mass Spectrometry raw data example files

Bioconductor version: 3.15

Ion Trap positive ionization mode data in mzML file format. Subset from 500-850 m/z and 1190-1310 seconds, incl. MS2 and MS3, intensity threshold 100.000. Extracts from FTICR Apex III, m/z 400-450. Subset of UPLC - Bruker micrOTOFq data, both mzML and mz5. LC-MSMS and MRM files from proteomics experiments. PSI mzIdentML example files for various search engines.

Author: Steffen Neumann <sneumann at ipb-halle.de>, Laurent Gatto <laurent.gatto at uclouvain.be> with contriutions from Johannes Rainer

Maintainer: Steffen Neumann <sneumann at ipb-halle.de>, Laurent Gatto <laurent.gatto at uclouvain.be>

Citation (from within R, enter citation("msdata")):

Installation

To install this package, start R (version "4.2") and enter:


if (!require("BiocManager", quietly = TRUE))
 install.packages("BiocManager")
BiocManager::install("msdata")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

Reference Manual PDF

NEWS Text

Need some help? Ask on the Bioconductor Support site!

Details

biocViews ExperimentData, MassSpectrometryData

Version 0.36.0

License GPL (>= 2)

Depends R (>= 3.5.0)

Imports

System Requirements

URL

Suggests xcms, mzR, MSnbase

Linking To

Enhances

Depends On Me

Imports Me

Suggests Me IPO, MetaboAnnotation, MobilityTransformR, MSnbase, msqrob2, mzR, peakPantheR, PSMatch, QFeatures, RforProteomics, Spectra, TargetDecoy, xcms

Links To Me

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Package Archives

Follow Installation instructions to use this package in your R session.

Source Package msdata_0.36.0.tar.gz

Windows Binary

macOS Binary (x86_64)

Source Repository git clone https://git.bioconductor.org/packages/msdata

Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/msdata

Package Short Url https://bioconductor.org/packages/msdata/

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