msd16s

This package is for version 3.15 of Bioconductor; for the stable, up-to-date release version, see msd16s.

Healthy and moderate to severe diarrhea 16S expression data

Bioconductor version: 3.15

Gut 16S sequencing expression data from 992 healthy and moderate-to-severe diarrhetic samples used in 'Diarrhea in young children from low-income countries leads to large-scale alterations in intestinal microbiota composition'.

Author: Joseph N. Paulson, Hector Corrada Bravo, Mihai Pop

Maintainer: Joseph N. Paulson <jpaulson at umiacs.umd.edu>

Citation (from within R, enter citation("msd16s")):

Installation

To install this package, start R (version "4.2") and enter:


if (!require("BiocManager", quietly = TRUE))
 install.packages("BiocManager")
BiocManager::install("msd16s")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("msd16s")

msd16s PDF R Script

Reference Manual PDF

NEWS Text

Need some help? Ask on the Bioconductor Support site!

Details

biocViews ExperimentData, MicrobiomeData, SequencingData

Version 1.16.0

License Artistic-2.0

Depends R (>= 2.10), Biobase, metagenomeSeq

Imports

System Requirements

URL http://www.cbcb.umd.edu/research/projects/GEMS-pathogen-discovery

Suggests

Linking To

Enhances

Depends On Me

Imports Me

Suggests Me metavizr, scTreeViz

Links To Me

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Package Archives

Follow Installation instructions to use this package in your R session.

Source Package msd16s_1.16.0.tar.gz

Windows Binary

macOS Binary (x86_64)

Source Repository git clone https://git.bioconductor.org/packages/msd16s

Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/msd16s

Package Short Url https://bioconductor.org/packages/msd16s/

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