clustifyrdatahub

This package is for version 3.15 of Bioconductor; for the stable, up-to-date release version, see clustifyrdatahub.

External data sets for clustifyr in ExperimentHub

Bioconductor version: 3.15

References made from external single-cell mRNA sequencing data sets, stored as average gene expression matrices. For use with clustifyr to assign cell type identities.

Author: Rui Fu [aut, cre] , Kent Riemondy [aut] , RNA Bioscience Initiative [fnd], Austin Gillen [ctb] , Jay Hesselberth [ctb] , Sidhant Puntambekar [ctb]

Maintainer: Rui Fu <raysinensis at gmail.com>

Citation (from within R, enter citation("clustifyrdatahub")):

Installation

To install this package, start R (version "4.2") and enter:


if (!require("BiocManager", quietly = TRUE))
 install.packages("BiocManager")
BiocManager::install("clustifyrdatahub")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("clustifyrdatahub")

clustifyrdatahub HTML R Script

Reference Manual PDF

NEWS Text

LICENSE Text

Need some help? Ask on the Bioconductor Support site!

Details

biocViews ExperimentData, ExperimentHub, ExpressionData, MicroarrayData, PackageTypeData, RNASeqData, SequencingData, SingleCellData

Version 1.6.0

License MIT + file LICENSE

Depends R (>= 4.0), ExperimentHub

Imports utils

System Requirements

URL https://rnabioco.github.io/clustifyrdatahub

Bug Reports https://github.com/rnabioco/clustifyrdatahub/issues

Suggests clustifyr, Seurat, usethis, rmarkdown, knitr, tidyr, BiocStyle

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Package Archives

Follow Installation instructions to use this package in your R session.

Source Package clustifyrdatahub_1.6.0.tar.gz

Windows Binary

macOS Binary (x86_64)

Source Repository git clone https://git.bioconductor.org/packages/clustifyrdatahub

Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/clustifyrdatahub

Package Short Url https://bioconductor.org/packages/clustifyrdatahub/

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