STexampleData

This package is for version 3.15 of Bioconductor; for the stable, up-to-date release version, see STexampleData.

Collection of spatially-resolved transcriptomics datasets in SpatialExperiment Bioconductor format

Bioconductor version: 3.15

Collection of spatially-resolved transcriptomics (SRT) datasets in SpatialExperiment Bioconductor format, for use in examples, demonstrations, and tutorials. The datasets are from several different SRT platforms and have been sourced from various publicly available sources. Several datasets include images and/or ground truth annotation labels.

Author: Lukas M. Weber [aut, cre]

Maintainer: Lukas M. Weber <lukas.weber.edu at gmail.com>

Citation (from within R, enter citation("STexampleData")):

Installation

To install this package, start R (version "4.2") and enter:


if (!require("BiocManager", quietly = TRUE))
 install.packages("BiocManager")
BiocManager::install("STexampleData")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("STexampleData")

STexampleData package overview HTML R Script

Reference Manual PDF

NEWS Text

LICENSE Text

Need some help? Ask on the Bioconductor Support site!

Details

biocViews ExperimentData, ExperimentHub, ExpressionData, Homo_sapiens_Data, Mus_musculus_Data, ReproducibleResearch, SingleCellData, SpatialData

Version 1.4.5

License MIT + file LICENSE

Depends ExperimentHub, SpatialExperiment

Imports utils

System Requirements

URL https://github.com/lmweber/STexampleData

Bug Reports https://github.com/lmweber/STexampleData/issues

Suggests BiocStyle, knitr, rmarkdown, BumpyMatrix

Linking To

Enhances

Depends On Me

Imports Me

Suggests Me ggspavis, nnSVG

Links To Me

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Package Archives

Follow Installation instructions to use this package in your R session.

Source Package STexampleData_1.4.5.tar.gz

Windows Binary

macOS Binary (x86_64)

Source Repository git clone https://git.bioconductor.org/packages/STexampleData

Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/STexampleData

Package Short Url https://bioconductor.org/packages/STexampleData/

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