LungCancerLines

This package is for version 3.15 of Bioconductor; for the stable, up-to-date release version, see LungCancerLines.

Reads from Two Lung Cancer Cell Lines

Bioconductor version: 3.15

Reads from an RNA-seq experiment between two lung cancer cell lines: H1993 (met) and H2073 (primary). The reads are stored as Fastq files and are meant for use with the TP53Genome object in the gmapR package.

Author: Cory Barr, Michael Lawrence

Maintainer: Cory Barr <barr.cory at gene.com>

Citation (from within R, enter citation("LungCancerLines")):

Installation

To install this package, start R (version "4.2") and enter:


if (!require("BiocManager", quietly = TRUE))
 install.packages("BiocManager")
BiocManager::install("LungCancerLines")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

Reference Manual PDF

Need some help? Ask on the Bioconductor Support site!

Details

biocViews CancerData, ExperimentData, Genome, LungCancerData, RNASeqData

Version 0.34.0

License Artistic-2.0

Depends

Imports Rsamtools

System Requirements

URL

Suggests

Linking To

Enhances

Depends On Me

Imports Me

Suggests Me gmapR, HTSeqGenie, VariantTools

Links To Me

Build Report Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package LungCancerLines_0.34.0.tar.gz

Windows Binary

macOS Binary (x86_64)

Source Repository git clone https://git.bioconductor.org/packages/LungCancerLines

Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/LungCancerLines

Package Short Url https://bioconductor.org/packages/LungCancerLines/

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