spkTools

This package is for version 3.15 of Bioconductor; for the stable, up-to-date release version, see spkTools.

Methods for Spike-in Arrays

Bioconductor version: 3.15

The package contains functions that can be used to compare expression measures on different array platforms.

Author: Matthew N McCall <mccallm at gmail.com>, Rafael A Irizarry <rafa at jhu.edu>

Maintainer: Matthew N McCall <mccallm at gmail.com>

Citation (from within R, enter citation("spkTools")):

To install this package, start R (version "4.2") and enter:


if (!require("BiocManager", quietly = TRUE))
 install.packages("BiocManager")
BiocManager::install("spkTools")

For older versions of R, please refer to the appropriate Bioconductor release.

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("spkTools")

spkTools: Spike-in Data Analysis and Visualization PDF R Script

Reference Manual PDF

Version 1.52.0

In Bioconductor since BioC 2.4 (R-2.9) (15 years)

License GPL (>= 2)

Depends R (>= 2.7.0), Biobase(>= 2.5.5)

Imports Biobase(>= 2.5.5), graphics, grDevices, gtools, methods, RColorBrewer, stats, utils

System Requirements

Suggests xtable

Linking To

Enhances

Depends On Me

Imports Me

Suggests Me

Links To Me

Build Report Build Report

Follow Installation instructions to use this package in your R session.

Source Package spkTools_1.52.0.tar.gz

Windows Binary spkTools_1.52.0.zip

macOS Binary (x86_64) spkTools_1.52.0.tgz

Source Repository git clone https://git.bioconductor.org/packages/spkTools

Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/spkTools

Package Downloads Report Download Stats

Old Source Packages for BioC 3.15 Source Archive