projectR

This package is for version 3.15 of Bioconductor; for the stable, up-to-date release version, see projectR.

Functions for the projection of weights from PCA, CoGAPS, NMF, correlation, and clustering

Bioconductor version: 3.15

Functions for the projection of data into the spaces defined by PCA, CoGAPS, NMF, correlation, and clustering.

Author: Gaurav Sharma, Genevieve Stein-O'Brien

Maintainer: Genevieve Stein-O'Brien <gsteinobrien at gmail.com>

Citation (from within R, enter citation("projectR")):

To install this package, start R (version "4.2") and enter:


if (!require("BiocManager", quietly = TRUE))
 install.packages("BiocManager")
BiocManager::install("projectR")

For older versions of R, please refer to the appropriate Bioconductor release.

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("projectR")

projectR PDF R Script

Reference Manual PDF

LICENSE Text

Version 1.12.0

In Bioconductor since BioC 3.9 (R-3.6) (5 years)

License GPL (==2)

Depends

Imports methods, cluster, stats, limma, CoGAPS, NMF, ROCR, ggalluvial, RColorBrewer, dplyr, reshape2, viridis, scales, ggplot2

System Requirements

Suggests BiocStyle, gridExtra, grid, testthat, devtools, knitr, rmarkdown, ComplexHeatmap

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Follow Installation instructions to use this package in your R session.

Source Package projectR_1.12.0.tar.gz

Windows Binary projectR_1.12.0.zip (64-bit only)

macOS Binary (x86_64) projectR_1.12.0.tgz

Source Repository git clone https://git.bioconductor.org/packages/projectR

Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/projectR

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Old Source Packages for BioC 3.15 Source Archive