ompBAM
This package is for version 3.15 of Bioconductor; for the stable, up-to-date release version, see ompBAM.
C++ Library for OpenMP-based multi-threaded sequential profiling of Binary Alignment Map (BAM) files
Bioconductor version: 3.15
This packages provides C++ header files for developers wishing to create R packages that processes BAM files. ompBAM automates file access, memory management, and handling of multiple threads 'behind the scenes', so developers can focus on creating domain-specific functionality. The included vignette contains detailed documentation of this API, including quick-start instructions to create a new ompBAM-based package, and step-by-step explanation of the functionality behind the example packaged included within ompBAM.
Author: Alex Chit Hei Wong [aut, cre, cph]
Maintainer: Alex Chit Hei Wong <a.wong at centenary.org.au>
citation("ompBAM")):
Installation
To install this package, start R (version "4.2") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("ompBAM")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("ompBAM")
Details
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Package Archives
Follow Installation instructions to use this package in your R session.