infinityFlow

This package is for version 3.15 of Bioconductor; for the stable, up-to-date release version, see infinityFlow.

Augmenting Massively Parallel Cytometry Experiments Using Multivariate Non-Linear Regressions

Bioconductor version: 3.15

Pipeline to analyze and merge data files produced by BioLegend's LEGENDScreen or BD Human Cell Surface Marker Screening Panel (BD Lyoplates).

Author: Etienne Becht [cre, aut]

Maintainer: Etienne Becht <etienne.becht at protonmail.com>

Citation (from within R, enter citation("infinityFlow")):

To install this package, start R (version "4.2") and enter:


if (!require("BiocManager", quietly = TRUE))
 install.packages("BiocManager")
BiocManager::install("infinityFlow")

For older versions of R, please refer to the appropriate Bioconductor release.

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("infinityFlow")

Basic usage of the infinityFlow package HTML R Script

Training non default regression models HTML R Script

Reference Manual PDF

Version 1.6.0

In Bioconductor since BioC 3.12 (R-4.0) (3.5 years)

License GPL-3

Depends R (>= 4.0.0), flowCore

Imports stats, grDevices, utils, graphics, pbapply, matlab, png, raster, grid, uwot, gtools, Biobase, generics, parallel, methods, xgboost

System Requirements

URL

Suggests knitr, rmarkdown, keras, tensorflow, glmnetUtils, e1071

Linking To

Enhances

Depends On Me

Imports Me

Suggests Me

Links To Me

Build Report Build Report

Follow Installation instructions to use this package in your R session.

Windows Binary infinityFlow_1.6.0.zip

macOS Binary (x86_64) infinityFlow_1.6.0.tgz

Source Repository git clone https://git.bioconductor.org/packages/infinityFlow

Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/infinityFlow

Package Downloads Report Download Stats

Old Source Packages for BioC 3.15 Source Archive