ccmap

This package is for version 3.15 of Bioconductor; for the stable, up-to-date release version, see ccmap.

Combination Connectivity Mapping

Bioconductor version: 3.15

Finds drugs and drug combinations that are predicted to reverse or mimic gene expression signatures. These drugs might reverse diseases or mimic healthy lifestyles.

Author: Alex Pickering

Maintainer: Alex Pickering <alexvpickering at gmail.com>

Citation (from within R, enter citation("ccmap")):

Installation

To install this package, start R (version "4.2") and enter:


if (!require("BiocManager", quietly = TRUE))
 install.packages("BiocManager")
BiocManager::install("ccmap")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("ccmap")

ccmap vignette HTML R Script

Reference Manual PDF

LICENSE Text

Need some help? Ask on the Bioconductor Support site!

Details

biocViews DifferentialExpression, GeneExpression, Microarray, Software, Transcription

Version 1.22.0

In Bioconductor since BioC 3.4 (R-3.3) (7.5 years)

License MIT + file LICENSE

Depends

Imports AnnotationDbi(>= 1.36.2), BiocManager (>= 1.30.4), ccdata(>= 1.1.2), doParallel (>= 1.0.10), data.table (>= 1.10.4), foreach (>= 1.4.3), parallel (>= 3.3.3), xgboost (>= 0.6.4), lsa (>= 0.73.1)

System Requirements

URL

Suggests crossmeta, knitr, rmarkdown, testthat, lydata

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Depends On Me

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Build Report Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package ccmap_1.22.0.tar.gz

Windows Binary ccmap_1.22.0.zip

macOS Binary (x86_64) ccmap_1.22.0.tgz

Source Repository git clone https://git.bioconductor.org/packages/ccmap

Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/ccmap

Bioc Package Browser https://code.bioconductor.org/browse/ccmap/

Package Short Url https://bioconductor.org/packages/ccmap/

Package Downloads Report Download Stats

Old Source Packages for BioC 3.15 Source Archive