REDseq
This package is for version 3.15 of Bioconductor; for the stable, up-to-date release version, see REDseq.
Analysis of high-throughput sequencing data processed by restriction enzyme digestion
Bioconductor version: 3.15
The package includes functions to build restriction enzyme cut site (RECS) map, distribute mapped sequences on the map with five different approaches, find enriched/depleted RECSs for a sample, and identify differentially enriched/depleted RECSs between samples.
Author: Lihua Julie Zhu, Junhui Li and Thomas Fazzio
Maintainer: Lihua Julie Zhu <julie.zhu at umassmed.edu>
citation("REDseq")):
Installation
To install this package, start R (version "4.2") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("REDseq")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("REDseq")
Details
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Follow Installation instructions to use this package in your R session.