MuData

This package is for version 3.15 of Bioconductor; for the stable, up-to-date release version, see MuData.

Serialization for MultiAssayExperiment Objects

Bioconductor version: 3.15

Save MultiAssayExperiments to h5mu files supported by muon and mudata. Muon is a Python framework for multimodal omics data analysis. It uses an HDF5-based format for data storage.

Author: Danila Bredikhin [aut, cre] , Ilia Kats [aut]

Maintainer: Danila Bredikhin <danila.bredikhin at embl.de>

Citation (from within R, enter citation("MuData")):

Installation

To install this package, start R (version "4.2") and enter:


if (!require("BiocManager", quietly = TRUE))
 install.packages("BiocManager")
BiocManager::install("MuData")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("MuData")

Blood CITE-seq with MuData HTML R Script

Cord Blood CITE-seq with MuData HTML R Script

Getting started with MuDataMae HTML R Script

Reference Manual PDF

NEWS Text

Need some help? Ask on the Bioconductor Support site!

Details

biocViews DataImport, Software

Version 1.0.0

In Bioconductor since BioC 3.15 (R-4.2) (2 years)

License GPL-3

Depends Matrix, S4Vectors, rhdf5

Imports methods, stats, MultiAssayExperiment, SingleCellExperiment, SummarizedExperiment, DelayedArray

System Requirements

URL https://github.com/ilia-kats/MuData

Bug Reports https://github.com/ilia-kats/MuData/issues

Suggests HDF5Array, rmarkdown, knitr, fs, testthat, BiocStyle, covr, SingleCellMultiModal, CiteFuse, scater

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Build Report Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package MuData_1.0.0.tar.gz

Windows Binary MuData_1.0.0.zip

macOS Binary (x86_64) MuData_1.0.0.tgz

Source Repository git clone https://git.bioconductor.org/packages/MuData

Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/MuData

Bioc Package Browser https://code.bioconductor.org/browse/MuData/

Package Short Url https://bioconductor.org/packages/MuData/

Package Downloads Report Download Stats

Old Source Packages for BioC 3.15 Source Archive