MLInterfaces

This package is for version 3.15 of Bioconductor; for the stable, up-to-date release version, see MLInterfaces.

Uniform interfaces to R machine learning procedures for data in Bioconductor containers

Bioconductor version: 3.15

This package provides uniform interfaces to machine learning code for data in R and Bioconductor containers.

Author: Vince Carey <stvjc at channing.harvard.edu>, Robert Gentleman, Jess Mar, and contributions from Jason Vertrees <jv at cs.dartmouth.edu> and Laurent Gatto <lg390 at cam.ac.uk>

Maintainer: V. Carey <stvjc at channing.harvard.edu>

Citation (from within R, enter citation("MLInterfaces")):

Installation

To install this package, start R (version "4.2") and enter:


if (!require("BiocManager", quietly = TRUE))
 install.packages("BiocManager")
BiocManager::install("MLInterfaces")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("MLInterfaces")

A machine learning tutorial: applications of the Bioconductor MLInterfaces package to expression and ChIP-Seq data PDF R Script

MLInterfaces Computer Cluster PDF R Script

MLInterfaces devel for schema-based MLearn PDF R Script

MLInterfaces Primer PDF R Script

Reference Manual PDF

NEWS Text

Need some help? Ask on the Bioconductor Support site!

Details

biocViews Classification, Clustering, Software

Version 1.76.0

In Bioconductor since BioC 1.6 (R-2.1) or earlier (> 19 years)

License LGPL

Depends R (>= 3.5), Rcpp, methods, BiocGenerics(>= 0.13.11), Biobase, annotate, cluster

Imports gdata, pls, sfsmisc, MASS, rpart, genefilter, fpc, ggvis, shiny, gbm, RColorBrewer, hwriter, threejs (>= 0.2.2), mlbench, stats4, tools, grDevices, graphics, stats, magrittr

System Requirements

URL

Suggests class, e1071, ipred, randomForest, gpls, pamr, nnet, ALL, hgu95av2.db, som, hu6800.db, lattice, caret (>= 5.07), golubEsets, ada, keggorthology, kernlab, mboost, party, klaR, testthat

Linking To

Enhances parallel

Depends On Me pRoloc, proteomics, SigCheck

Imports Me

Suggests Me

Links To Me

Build Report Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package MLInterfaces_1.76.0.tar.gz

Windows Binary MLInterfaces_1.76.0.zip (64-bit only)

macOS Binary (x86_64) MLInterfaces_1.76.0.tgz

Source Repository git clone https://git.bioconductor.org/packages/MLInterfaces

Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/MLInterfaces

Bioc Package Browser https://code.bioconductor.org/browse/MLInterfaces/

Package Short Url https://bioconductor.org/packages/MLInterfaces/

Package Downloads Report Download Stats

Old Source Packages for BioC 3.15 Source Archive