IVAS

This package is for version 3.15 of Bioconductor; for the stable, up-to-date release version, see IVAS.

Identification of genetic Variants affecting Alternative Splicing

Bioconductor version: 3.15

Identification of genetic variants affecting alternative splicing.

Author: Seonggyun Han, Sangsoo Kim

Maintainer: Seonggyun Han <hangost at ssu.ac.kr>

Citation (from within R, enter citation("IVAS")):

To install this package, start R (version "4.2") and enter:


if (!require("BiocManager", quietly = TRUE))
 install.packages("BiocManager")
BiocManager::install("IVAS")

For older versions of R, please refer to the appropriate Bioconductor release.

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("IVAS")

IVAS : Identification of genetic Variants affecting Alternative Splicing PDF R Script

Reference Manual PDF

NEWS Text

Version 2.16.0

In Bioconductor since BioC 3.1 (R-3.2) (9 years)

License GPL-2

Depends R (> 3.0.0), GenomicFeatures, ggplot2, Biobase

Imports doParallel, lme4, BiocGenerics, GenomicRanges, IRanges, foreach, AnnotationDbi, S4Vectors, GenomeInfoDb, ggfortify, grDevices, methods, Matrix, BiocParallel, utils, stats

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Depends On Me IMAS

Imports Me ASpediaFI

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Follow Installation instructions to use this package in your R session.

Source Package IVAS_2.16.0.tar.gz

Windows Binary IVAS_2.16.0.zip

macOS Binary (x86_64) IVAS_2.16.0.tgz

Source Repository git clone https://git.bioconductor.org/packages/IVAS

Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/IVAS

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Old Source Packages for BioC 3.15 Source Archive