ArrayExpress

This package is for version 3.15 of Bioconductor; for the stable, up-to-date release version, see ArrayExpress.

Access the ArrayExpress Microarray Database at EBI and build Bioconductor data structures: ExpressionSet, AffyBatch, NChannelSet

Bioconductor version: 3.15

Access the ArrayExpress Repository at EBI and build Bioconductor data structures: ExpressionSet, AffyBatch, NChannelSet

Author: Audrey Kauffmann, Ibrahim Emam, Michael Schubert

Maintainer: Suhaib Mohammed <suhaib at ebi.ac.uk>

Citation (from within R, enter citation("ArrayExpress")):

To install this package, start R (version "4.2") and enter:


if (!require("BiocManager", quietly = TRUE))
 install.packages("BiocManager")
BiocManager::install("ArrayExpress")

For older versions of R, please refer to the appropriate Bioconductor release.

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("ArrayExpress")

ArrayExpress: Import and convert ArrayExpress data sets into R object PDF R Script

Reference Manual PDF

Version 1.56.0

In Bioconductor since BioC 2.3 (R-2.8) (15.5 years)

License Artistic-2.0

Depends R (>= 2.9.0), Biobase(>= 2.4.0)

Imports XML, oligo, limma

System Requirements

URL

Suggests affy

Linking To

Enhances

Imports Me seeker

Suggests Me Hiiragi2013

Links To Me

Build Report Build Report

Follow Installation instructions to use this package in your R session.

Windows Binary ArrayExpress_1.56.0.zip

macOS Binary (x86_64) ArrayExpress_1.56.0.tgz

Source Repository git clone https://git.bioconductor.org/packages/ArrayExpress

Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/ArrayExpress

Package Downloads Report Download Stats

Old Source Packages for BioC 3.15 Source Archive