ewceData

This package is for version 3.14 of Bioconductor; for the stable, up-to-date release version, see ewceData.

The ewceData package provides reference data required for ewce

Bioconductor version: 3.14

This package provides reference data required for ewce. Expression Weighted Celltype Enrichment (EWCE) is used to determine which cell types are enriched within gene lists. The package provides tools for testing enrichments within simple gene lists (such as human disease associated genes) and those resulting from differential expression studies. The package does not depend upon any particular Single Cell Transcriptome dataset and user defined datasets can be loaded in and used in the analyses.

Author: Alan Murphy [cre] , Nathan Skene [aut]

Maintainer: Alan Murphy <alanmurph94 at hotmail.com>

Citation (from within R, enter citation("ewceData")):

Installation

To install this package, start R (version "4.1") and enter:


if (!require("BiocManager", quietly = TRUE))
 install.packages("BiocManager")
BiocManager::install("ewceData")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("ewceData")

Data package for Expression Weighted Celltype Enrichment EWCE HTML R Script

Reference Manual PDF

Need some help? Ask on the Bioconductor Support site!

Details

biocViews ExperimentData, ExperimentHub, ExpressionData, Genome, MicroarrayData, Proteome, RNASeqData, SequencingData, SingleCellData

Version 1.2.0

License Artistic-2.0

Depends R (>= 4.1), ExperimentHub

Imports

System Requirements

URL https://github.com/neurogenomics/ewceData

Suggests knitr, BiocStyle, ggplot2, cowplot, rmarkdown, markdown, testthat (>= 3.0.0)

Linking To

Enhances

Depends On Me

Imports Me EWCE

Suggests Me

Links To Me

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Package Archives

Follow Installation instructions to use this package in your R session.

Source Package ewceData_1.2.0.tar.gz

Windows Binary

macOS 10.13 (High Sierra)

Source Repository git clone https://git.bioconductor.org/packages/ewceData

Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/ewceData

Package Short Url https://bioconductor.org/packages/ewceData/

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