TabulaMurisData

This package is for version 3.14 of Bioconductor; for the stable, up-to-date release version, see TabulaMurisData.

10x And SmartSeq2 Data From The Tabula Muris Consortium

Bioconductor version: 3.14

Access to processed 10x (droplet) and SmartSeq2 (on FACS-sorted cells) single-cell RNA-seq data from the Tabula Muris consortium (http://tabula-muris.ds.czbiohub.org/).

Author: Charlotte Soneson [aut, cre]

Maintainer: Charlotte Soneson <charlottesoneson at gmail.com>

Citation (from within R, enter citation("TabulaMurisData")):

Installation

To install this package, start R (version "4.1") and enter:


if (!require("BiocManager", quietly = TRUE))
 install.packages("BiocManager")
BiocManager::install("TabulaMurisData")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("TabulaMurisData")

Tabula Muris data HTML R Script

Reference Manual PDF

NEWS Text

LICENSE Text

Need some help? Ask on the Bioconductor Support site!

Details

biocViews ExperimentData, RNASeqData, SingleCellData

Version 1.12.0

License MIT + file LICENSE

Depends R (>= 3.5)

Imports ExperimentHub, utils

System Requirements

URL

Suggests knitr, rmarkdown, BiocStyle, SingleCellExperiment, scran, scater, iSEE, testthat

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Depends On Me

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Package Archives

Follow Installation instructions to use this package in your R session.

Source Package TabulaMurisData_1.12.0.tar.gz

Windows Binary

macOS 10.13 (High Sierra)

Source Repository git clone https://git.bioconductor.org/packages/TabulaMurisData

Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/TabulaMurisData

Package Short Url https://bioconductor.org/packages/TabulaMurisData/

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