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NxtIRFdata
This package is for version 3.14 of Bioconductor; for the stable, up-to-date release version, see NxtIRFdata.
Data for NxtIRF
Bioconductor version: 3.14
NxtIRFdata is a companion package for NxtIRF, which is an IRFinder- based R package for Intron Retention and Alternative Splicing quantitation for RNA-seq BAM files. NxtIRFdata contains Mappability files required for the generation of human and mouse references. NxtIRFdata also contains a synthetic genome reference and example BAM files used to test NxtIRF. BAM files are based on 6 samples from the Leucegene dataset provided by NCBI Gene Expression Omnibus under accession number GSE67039.
Author: Alex Chit Hei Wong [aut, cre, cph], Ulf Schmitz [ctb]
Maintainer: Alex Chit Hei Wong <a.wong at centenary.org.au>
citation("NxtIRFdata")):
Installation
To install this package, start R (version "4.1") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("NxtIRFdata")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("NxtIRFdata")
Details
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Package Archives
Follow Installation instructions to use this package in your R session.