MouseGastrulationData

This package is for version 3.14 of Bioconductor; for the stable, up-to-date release version, see MouseGastrulationData.

Single-Cell -omics Data across Mouse Gastrulation and Early Organogenesis

DOI: 10.18129/B9.bioc.MouseGastrulationData

Bioconductor version: 3.14

Provides processed and raw count data for single-cell RNA sequencing, single-cell ATAC-seq, and seqFISH (spatial transcriptomic) experiments performed along a timecourse of mouse gastrulation and early organogenesis.

Author: Jonathan Griffiths [aut, cre], Aaron Lun [aut]

Maintainer: Jonathan Griffiths <jonathan.griffiths.94 at gmail.com>

Citation (from within R, enter citation("MouseGastrulationData")):

Installation

To install this package, start R (version "4.1") and enter:


if (!require("BiocManager", quietly = TRUE))
 install.packages("BiocManager")
BiocManager::install("MouseGastrulationData")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("MouseGastrulationData")

Available datasets HTML R Script

Reference Manual PDF

NEWS Text

Need some help? Ask on the Bioconductor Support site!

Details

biocViews ExperimentData, ExperimentHub, ExpressionData, Mus_musculus_Data, RNASeqData, SequencingData, SingleCellData

Version 1.8.0

License GPL-3

Depends R (>= 4.1), SingleCellExperiment, SummarizedExperiment, SpatialExperiment

Imports methods, ExperimentHub, BiocGenerics, S4Vectors, BumpyMatrix

System Requirements

URL https://github.com/MarioniLab/MouseGastrulationData

Bug Reports https://github.com/MarioniLab/MouseGastrulationData/issues

Suggests BiocStyle, knitr, rmarkdown

Linking To

Enhances

Depends On Me OSCA.multisample

Imports Me

Suggests Me miloR

Links To Me

Build Report Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package MouseGastrulationData_1.8.0.tar.gz

Windows Binary

macOS 10.13 (High Sierra)

Source Repository git clone https://git.bioconductor.org/packages/MouseGastrulationData

Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/MouseGastrulationData

Package Short Url https://bioconductor.org/packages/MouseGastrulationData/

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