DmelSGI

This package is for version 3.14 of Bioconductor; for the stable, up-to-date release version, see DmelSGI.

Experimental data and documented source code for the paper "A Map of Directional Genetic Interactions in a Metazoan Cell"

Bioconductor version: 3.14

The package contains the experimental data and documented source code of the manuscript "Fischer et al., A Map of Directional Genetic Interactions in a Metazoan Cell, eLife, 2015, in Press.". The vignette code generates all figures in the paper.

Author: Bernd Fischer [aut], Wolfgang Huber [ctb], Mike Smith [cre]

Maintainer: Mike Smith <mike.smith at embl.de>

Citation (from within R, enter citation("DmelSGI")):

Installation

To install this package, start R (version "4.1") and enter:


if (!require("BiocManager", quietly = TRUE))
 install.packages("BiocManager")
BiocManager::install("DmelSGI")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("DmelSGI")

DmelSGI PDF R Script

Reference Manual PDF

NEWS Text

Need some help? Ask on the Bioconductor Support site!

Details

biocViews CellCulture, Drosophila_melanogaster_Data, ExperimentData, HighThroughputImagingData, HighthroughputImagingData, MicrotitrePlateAssayData, ReproducibleResearch

Version 1.26.0

License Artistic-2.0

Depends R (>= 3.0)

Imports grid, TSP, limma, rhdf5, knitr, abind, gplots, igraph, grDevices, graphics, stats

System Requirements

URL

Suggests BiocStyle, EBImage, RColorBrewer, RNAinteractMAPK, cgdsr, hwriter, xtable, beeswarm

Linking To

Enhances

Depends On Me

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Package Archives

Follow Installation instructions to use this package in your R session.

Source Package DmelSGI_1.26.0.tar.gz

Windows Binary

macOS 10.13 (High Sierra)

Source Repository git clone https://git.bioconductor.org/packages/DmelSGI

Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/DmelSGI

Package Short Url https://bioconductor.org/packages/DmelSGI/

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