subSeq

This package is for version 3.14 of Bioconductor; for the stable, up-to-date release version, see subSeq.

Subsampling of high-throughput sequencing count data

Bioconductor version: 3.14

Subsampling of high throughput sequencing count data for use in experiment design and analysis.

Author: David Robinson, John D. Storey, with contributions from Andrew J. Bass

Maintainer: Andrew J. Bass <ajbass at princeton.edu>, John D. Storey <jstorey at princeton.edu>

Citation (from within R, enter citation("subSeq")):

To install this package, start R (version "4.1") and enter:


if (!require("BiocManager", quietly = TRUE))
 install.packages("BiocManager")
BiocManager::install("subSeq")

For older versions of R, please refer to the appropriate Bioconductor release.

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("subSeq")

subSeq Example PDF R Script

Reference Manual PDF

NEWS Text

LICENSE Text

Version 1.24.0

In Bioconductor since BioC 3.2 (R-3.2) (8.5 years)

License MIT + file LICENSE

Depends R (>= 3.2)

Imports data.table, dplyr, tidyr, ggplot2, magrittr, qvalue(>= 1.99), digest, Biobase

System Requirements

Suggests limma, edgeR, DESeq2, DEXSeq(>= 1.9.7), testthat, knitr

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Follow Installation instructions to use this package in your R session.

Source Package subSeq_1.24.0.tar.gz

Windows Binary subSeq_1.24.0.zip (32- & 64-bit)

macOS 10.13 (High Sierra) subSeq_1.24.0.tgz

Source Repository git clone https://git.bioconductor.org/packages/subSeq

Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/subSeq

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Old Source Packages for BioC 3.14 Source Archive