selectKSigs

This package is for version 3.14 of Bioconductor; for the stable, up-to-date release version, see selectKSigs.

Selecting the number of mutational signatures using a perplexity-based measure and cross-validation

Bioconductor version: 3.14

A package to suggest the number of mutational signatures in a collection of somatic mutations using calculating the cross-validated perplexity score.

Author: Zhi Yang [aut, cre], Yuichi Shiraishi [ctb]

Maintainer: Zhi Yang <zyang895 at gmail.com>

Citation (from within R, enter citation("selectKSigs")):

To install this package, start R (version "4.1") and enter:


if (!require("BiocManager", quietly = TRUE))
 install.packages("BiocManager")
BiocManager::install("selectKSigs")

For older versions of R, please refer to the appropriate Bioconductor release.

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("selectKSigs")

An introduction to HiLDA HTML R Script

Reference Manual PDF

NEWS Text

Version 1.6.0

In Bioconductor since BioC 3.11 (R-4.0) (4 years)

License GPL-3

Depends R (>= 3.6)

Imports HiLDA, magrittr, gtools, methods, Rcpp

System Requirements

Suggests knitr, rmarkdown, testthat, BiocStyle, ggplot2, dplyr, tidyr

Linking To Rcpp

Enhances

Depends On Me

Imports Me

Suggests Me

Links To Me

Build Report Build Report

Follow Installation instructions to use this package in your R session.

Windows Binary selectKSigs_1.6.0.zip

macOS 10.13 (High Sierra) selectKSigs_1.6.0.tgz

Source Repository git clone https://git.bioconductor.org/packages/selectKSigs

Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/selectKSigs

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Old Source Packages for BioC 3.14 Source Archive