sangerseqR

This package is for version 3.14 of Bioconductor; for the stable, up-to-date release version, see sangerseqR.

Tools for Sanger Sequencing Data in R

Bioconductor version: 3.14

This package contains several tools for analyzing Sanger Sequencing data files in R, including reading .scf and .ab1 files, making basecalls and plotting chromatograms.

Author: Jonathon T. Hill, Bradley Demarest

Maintainer: Jonathon Hill <jhill at byu.edu>

Citation (from within R, enter citation("sangerseqR")):

Installation

To install this package, start R (version "4.1") and enter:


if (!require("BiocManager", quietly = TRUE))
 install.packages("BiocManager")
BiocManager::install("sangerseqR")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("sangerseqR")

sangerseqR PDF R Script

Reference Manual PDF

Need some help? Ask on the Bioconductor Support site!

Details

biocViews SNP, Sequencing, Software, Visualization

Version 1.30.1

In Bioconductor since BioC 2.14 (R-3.1) (10 years)

License GPL-2

Depends R (>= 3.0.2), Biostrings

Imports methods, shiny

System Requirements

URL

Suggests BiocStyle, knitr, RUnit, BiocGenerics

Linking To

Enhances

Depends On Me sangeranalyseR

Imports Me

Suggests Me CrispRVariants

Links To Me

Build Report Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package sangerseqR_1.30.1.tar.gz

Windows Binary sangerseqR_1.30.1.zip (32- & 64-bit)

macOS 10.13 (High Sierra) sangerseqR_1.30.1.tgz

Source Repository git clone https://git.bioconductor.org/packages/sangerseqR

Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/sangerseqR

Bioc Package Browser https://code.bioconductor.org/browse/sangerseqR/

Package Short Url https://bioconductor.org/packages/sangerseqR/

Package Downloads Report Download Stats

Old Source Packages for BioC 3.14 Source Archive