roar

This package is for version 3.14 of Bioconductor; for the stable, up-to-date release version, see roar.

Identify differential APA usage from RNA-seq alignments

Bioconductor version: 3.14

Identify preferential usage of APA sites, comparing two biological conditions, starting from known alternative sites and alignments obtained from standard RNA-seq experiments.

Author: Elena Grassi

Maintainer: Elena Grassi <grassi.e at gmail.com>

Citation (from within R, enter citation("roar")):

Installation

To install this package, start R (version "4.1") and enter:


if (!require("BiocManager", quietly = TRUE))
 install.packages("BiocManager")
BiocManager::install("roar")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("roar")

Identify differential APA usage from RNA-seq alignments PDF R Script

Reference Manual PDF

NEWS Text

Need some help? Ask on the Bioconductor Support site!

Details

biocViews HighThroughputSequencing, RNAseq, Sequencing, Software, Transcription

Version 1.30.0

In Bioconductor since BioC 2.14 (R-3.1) (10 years)

License GPL-3

Depends R (>= 3.0.1)

Imports methods, BiocGenerics, S4Vectors, IRanges, GenomicRanges, SummarizedExperiment, GenomicAlignments(>= 0.99.4), rtracklayer, GenomeInfoDb

System Requirements

URL https://github.com/vodkatad/roar/

Suggests RNAseqData.HNRNPC.bam.chr14, testthat

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Build Report Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package roar_1.30.0.tar.gz

Windows Binary roar_1.30.0.zip

macOS 10.13 (High Sierra) roar_1.30.0.tgz

Source Repository git clone https://git.bioconductor.org/packages/roar

Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/roar

Bioc Package Browser https://code.bioconductor.org/browse/roar/

Package Short Url https://bioconductor.org/packages/roar/

Package Downloads Report Download Stats

Old Source Packages for BioC 3.14 Source Archive