qsea
This package is for version 3.14 of Bioconductor; for the stable, up-to-date release version, see qsea.
IP-seq data analysis and vizualization
Bioconductor version: 3.14
qsea (quantitative sequencing enrichment analysis) was developed as the successor of the MEDIPS package for analyzing data derived from methylated DNA immunoprecipitation (MeDIP) experiments followed by sequencing (MeDIP-seq). However, qsea provides several functionalities for the analysis of other kinds of quantitative sequencing data (e.g. ChIP-seq, MBD-seq, CMS-seq and others) including calculation of differential enrichment between groups of samples.
Author: Matthias Lienhard, Lukas Chavez, Ralf Herwig
Maintainer: Matthias Lienhard <lienhard at molgen.mpg.de>
citation("qsea")):
Installation
To install this package, start R (version "4.1") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("qsea")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("qsea")
Details
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Package Archives
Follow Installation instructions to use this package in your R session.