psygenet2r

This package is for version 3.14 of Bioconductor; for the stable, up-to-date release version, see psygenet2r.

psygenet2r - An R package for querying PsyGeNET and to perform comorbidity studies in psychiatric disorders

Bioconductor version: 3.14

Package to retrieve data from PsyGeNET database (www.psygenet.org) and to perform comorbidity studies with PsyGeNET's and user's data.

Author: Alba Gutierrez-Sacristan [aut, cre], Carles Hernandez-Ferrer [aut], Jaun R. Gonzalez [aut], Laura I. Furlong [aut]

Maintainer: Alba Gutierrez-Sacristan <a.gutierrez.sacristan at gmail.com>

Citation (from within R, enter citation("psygenet2r")):

To install this package, start R (version "4.1") and enter:


if (!require("BiocManager", quietly = TRUE))
 install.packages("BiocManager")
BiocManager::install("psygenet2r")

For older versions of R, please refer to the appropriate Bioconductor release.

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("psygenet2r")

psygenet2r: An R package for querying PsyGeNET and to perform comorbidity studies in psychiatric disorders HTML R Script

psygenet2r: Case study on GWAS on bipolar disorder HTML R Script

Reference Manual PDF

NEWS Text

LICENSE Text

Version 1.26.0

In Bioconductor since BioC 3.3 (R-3.3) (8 years)

License MIT + file LICENSE

Depends R (>= 3.4)

Imports stringr, RCurl, igraph, ggplot2, reshape2, grid, parallel, biomaRt, BgeeDB, topGO, Biobase, labeling, GO.db

System Requirements

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Suggests testthat, knitr, rmarkdown

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Follow Installation instructions to use this package in your R session.

Windows Binary psygenet2r_1.26.0.zip

macOS 10.13 (High Sierra) psygenet2r_1.26.0.tgz

Source Repository git clone https://git.bioconductor.org/packages/psygenet2r

Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/psygenet2r

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Old Source Packages for BioC 3.14 Source Archive