omicsPrint

This package is for version 3.14 of Bioconductor; for the stable, up-to-date release version, see omicsPrint.

Cross omic genetic fingerprinting

Bioconductor version: 3.14

omicsPrint provides functionality for cross omic genetic fingerprinting, for example, to verify sample relationships between multiple omics data types, i.e. genomic, transcriptomic and epigenetic (DNA methylation).

Author: Maarten van Iterson [aut], Davy Cats [cre]

Maintainer: Davy Cats <davycats.dc at gmail.com>

Citation (from within R, enter citation("omicsPrint")):

Installation

To install this package, start R (version "4.1") and enter:


if (!require("BiocManager", quietly = TRUE))
 install.packages("BiocManager")
BiocManager::install("omicsPrint")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("omicsPrint")

omicsPrint: detection of data linkage errors in multiple omics studies HTML R Script

Reference Manual PDF

NEWS Text

Need some help? Ask on the Bioconductor Support site!

Details

biocViews DNAMethylation, Epigenetics, GeneticVariability, Genetics, ImmunoOncology, QualityControl, Software, Transcription, Transcriptomics

Version 1.14.0

In Bioconductor since BioC 3.7 (R-3.5) (6 years)

License GPL (>= 2)

Depends R (>= 3.5), MASS

Imports methods, matrixStats, graphics, stats, SummarizedExperiment, MultiAssayExperiment, RaggedExperiment

System Requirements

URL

Suggests BiocStyle, knitr, rmarkdown, testthat, GEOquery, VariantAnnotation, Rsamtools, BiocParallel, GenomicRanges, FDb.InfiniumMethylation.hg19, snpStats

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Build Report Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package omicsPrint_1.14.0.tar.gz

Windows Binary omicsPrint_1.14.0.zip

macOS 10.13 (High Sierra) omicsPrint_1.14.0.tgz

Source Repository git clone https://git.bioconductor.org/packages/omicsPrint

Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/omicsPrint

Bioc Package Browser https://code.bioconductor.org/browse/omicsPrint/

Package Short Url https://bioconductor.org/packages/omicsPrint/

Package Downloads Report Download Stats

Old Source Packages for BioC 3.14 Source Archive