nondetects

This package is for version 3.14 of Bioconductor; for the stable, up-to-date release version, see nondetects.

Non-detects in qPCR data

Bioconductor version: 3.14

Methods to model and impute non-detects in the results of qPCR experiments.

Author: Matthew N. McCall <mccallm at gmail.com>, Valeriia Sherina <valery.sherina at gmail.com>

Maintainer: Valeriia Sherina <valery.sherina at gmail.com>

Citation (from within R, enter citation("nondetects")):

To install this package, start R (version "4.1") and enter:


if (!require("BiocManager", quietly = TRUE))
 install.packages("BiocManager")
BiocManager::install("nondetects")

For older versions of R, please refer to the appropriate Bioconductor release.

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("nondetects")

Title of your vignette HTML R Script

Reference Manual PDF

NEWS Text

Version 2.24.0

In Bioconductor since BioC 2.14 (R-3.1) (10 years)

License GPL-3

Depends R (>= 3.2), Biobase(>= 2.22.0)

Imports limma, mvtnorm, utils, methods, arm, HTqPCR(>= 1.16.0)

System Requirements

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Suggests knitr, rmarkdown, BiocStyle(>= 1.0.0), RUnit, BiocGenerics(>= 0.8.0)

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Follow Installation instructions to use this package in your R session.

Windows Binary nondetects_2.24.0.zip

macOS 10.13 (High Sierra) nondetects_2.24.0.tgz

Source Repository git clone https://git.bioconductor.org/packages/nondetects

Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/nondetects

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Old Source Packages for BioC 3.14 Source Archive