mzR
This package is for version 3.14 of Bioconductor; for the stable, up-to-date release version, see mzR.
parser for netCDF, mzXML, mzData and mzML and mzIdentML files (mass spectrometry data)
DOI: 10.18129/B9.bioc.mzR
Bioconductor version: 3.14
mzR provides a unified API to the common file formats and parsers available for mass spectrometry data. It comes with a wrapper for the ISB random access parser for mass spectrometry mzXML, mzData and mzML files. The package contains the original code written by the ISB, and a subset of the proteowizard library for mzML and mzIdentML. The netCDF reading code has previously been used in XCMS.
Author: Bernd Fischer, Steffen Neumann, Laurent Gatto, Qiang Kou, Johannes Rainer
Maintainer: Steffen Neumann <sneumann at ipb-halle.de>, Laurent Gatto <laurent.gatto at uclouvain.be>, Qiakng Kou <qkou at umail.iu.edu>
citation("mzR")):
Installation
To install this package, start R (version "4.1") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("mzR")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("mzR")
Details
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Follow Installation instructions to use this package in your R session.