matter

This package is for version 3.14 of Bioconductor; for the stable, up-to-date release version, see matter.

A framework for rapid prototyping with file-based data structures

Bioconductor version: 3.14

Memory-efficient reading, writing, and manipulation of structured binary data as file-based vectors, matrices, arrays, lists, and data frames.

Author: Kylie A. Bemis <k.bemis at northeastern.edu>

Maintainer: Kylie A. Bemis <k.bemis at northeastern.edu>

Citation (from within R, enter citation("matter")):

To install this package, start R (version "4.1") and enter:


if (!require("BiocManager", quietly = TRUE))
 install.packages("BiocManager")
BiocManager::install("matter")

For older versions of R, please refer to the appropriate Bioconductor release.

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("matter")

matter: Rapid prototyping with data on disk PDF R Script

matter: Supplementary 1 - Simulations and comparative benchmarks PDF R Script

matter: Supplementary 2 - 3D mass spectrometry imaging case study PDF R Script

Reference Manual PDF

NEWS Text

Version 1.20.0

In Bioconductor since BioC 3.4 (R-3.3) (7.5 years)

License Artistic-2.0

Depends R (>= 3.5), BiocParallel, Matrix, methods, stats, biglm

Imports BiocGenerics, ProtGenerics, digest, irlba, utils

System Requirements

Suggests BiocStyle, testthat

Linking To

Enhances

Depends On Me

Imports Me Cardinal

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Build Report Build Report

Follow Installation instructions to use this package in your R session.

Source Package matter_1.20.0.tar.gz

Windows Binary matter_1.20.0.zip

macOS 10.13 (High Sierra) matter_1.20.0.tgz

Source Repository git clone https://git.bioconductor.org/packages/matter

Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/matter

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Old Source Packages for BioC 3.14 Source Archive