lapmix

This package is for version 3.14 of Bioconductor; for the stable, up-to-date release version, see lapmix.

Laplace Mixture Model in Microarray Experiments

Bioconductor version: 3.14

Laplace mixture modelling of microarray experiments. A hierarchical Bayesian approach is used, and the hyperparameters are estimated using empirical Bayes. The main purpose is to identify differentially expressed genes.

Author: Yann Ruffieux, contributions from Debjani Bhowmick, Anthony C. Davison, and Darlene R. Goldstein

Maintainer: Yann Ruffieux <yann.ruffieux at epfl.ch>

Citation (from within R, enter citation("lapmix")):

Installation

To install this package, start R (version "4.1") and enter:


if (!require("BiocManager", quietly = TRUE))
 install.packages("BiocManager")
BiocManager::install("lapmix")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("lapmix")

lapmix example PDF R Script

Reference Manual PDF

Need some help? Ask on the Bioconductor Support site!

Details

biocViews DifferentialExpression, Microarray, OneChannel, Software

Version 1.60.0

In Bioconductor since BioC 1.9 (R-2.4) (17.5 years)

License GPL (>= 2)

Depends R (>= 2.6.0), stats

Imports Biobase, graphics, grDevices, methods, stats, tools, utils

System Requirements

URL http://www.r-project.org http://www.bioconductor.org http://stat.epfl.ch

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Package Archives

Follow Installation instructions to use this package in your R session.

Source Package lapmix_1.60.0.tar.gz

Windows Binary lapmix_1.60.0.zip

macOS 10.13 (High Sierra) lapmix_1.60.0.tgz

Source Repository git clone https://git.bioconductor.org/packages/lapmix

Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/lapmix

Bioc Package Browser https://code.bioconductor.org/browse/lapmix/

Package Short Url https://bioconductor.org/packages/lapmix/

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Old Source Packages for BioC 3.14 Source Archive