isomiRs

This package is for version 3.14 of Bioconductor; for the stable, up-to-date release version, see isomiRs.

Analyze isomiRs and miRNAs from small RNA-seq

Bioconductor version: 3.14

Characterization of miRNAs and isomiRs, clustering and differential expression.

Author: Lorena Pantano [aut, cre], Georgia Escaramis [aut] (CIBERESP - CIBER Epidemiologia y Salud Publica)

Maintainer: Lorena Pantano <lorena.pantano at gmail.com>

Citation (from within R, enter citation("isomiRs")):

To install this package, start R (version "4.1") and enter:


if (!require("BiocManager", quietly = TRUE))
 install.packages("BiocManager")
BiocManager::install("isomiRs")

For older versions of R, please refer to the appropriate Bioconductor release.

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("isomiRs")

miRNA and isomiR analysis HTML R Script

Reference Manual PDF

NEWS Text

LICENSE Text

Version 1.22.1

In Bioconductor since BioC 3.3 (R-3.3) (8 years)

License MIT + file LICENSE

Depends R (>= 3.5), DiscriMiner, SummarizedExperiment

Imports AnnotationDbi, assertive.sets, BiocGenerics, Biobase, broom, cluster, cowplot, DEGreport, DESeq2, IRanges, dplyr, GenomicRanges, gplots, ggplot2, gtools, gridExtra, grid, grDevices, graphics, GGally, limma, methods, RColorBrewer, readr, reshape, rlang, stats, stringr, S4Vectors, tidyr, tibble

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Suggests knitr, rmarkdown, org.Mm.eg.db, targetscan.Hs.eg.db, pheatmap, BiocStyle, testthat

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Follow Installation instructions to use this package in your R session.

Source Package isomiRs_1.22.1.tar.gz

Windows Binary isomiRs_1.22.1.zip

macOS 10.13 (High Sierra) isomiRs_1.22.1.tgz

Source Repository git clone https://git.bioconductor.org/packages/isomiRs

Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/isomiRs

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Old Source Packages for BioC 3.14 Source Archive