iSEEu

This package is for version 3.14 of Bioconductor; for the stable, up-to-date release version, see iSEEu.

iSEE Universe

Bioconductor version: 3.14

iSEEu (the iSEE universe) contains diverse functionality to extend the usage of the iSEE package, including additional classes for the panels, or modes allowing easy configuration of iSEE applications.

Author: Kevin Rue-Albrecht [aut, cre] , Charlotte Soneson [aut] , Federico Marini [aut] , Aaron Lun [aut] , Michael Stadler [ctb]

Maintainer: Kevin Rue-Albrecht <kevinrue67 at gmail.com>

Citation (from within R, enter citation("iSEEu")):

Installation

To install this package, start R (version "4.1") and enter:


if (!require("BiocManager", quietly = TRUE))
 install.packages("BiocManager")
BiocManager::install("iSEEu")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("iSEEu")

Panel universe HTML R Script

Reference Manual PDF

NEWS Text

LICENSE Text

Need some help? Ask on the Bioconductor Support site!

Details

biocViews CellBasedAssays, Clustering, DimensionReduction, FeatureExtraction, GUI, GeneExpression, ImmunoOncology, SingleCell, Software, Transcription, Transcriptomics, Visualization

Version 1.6.0

In Bioconductor since BioC 3.11 (R-4.0) (4 years)

License MIT + file LICENSE

Depends iSEE

Imports methods, S4Vectors, IRanges, shiny, SummarizedExperiment, SingleCellExperiment, ggplot2, DT, stats, colourpicker, shinyAce

System Requirements

URL https://github.com/iSEE/iSEEu

Bug Reports https://github.com/iSEE/iSEEu/issues

Suggests scRNAseq, scater, scran, airway, edgeR, AnnotationDbi, org.Hs.eg.db, GO.db, KEGGREST, knitr, igraph, rmarkdown, BiocStyle, htmltools, Rtsne, uwot, testthat (>= 2.1.0), covr

Linking To

Enhances

Depends On Me

Imports Me

Suggests Me

Links To Me

Build Report Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package iSEEu_1.6.0.tar.gz

Windows Binary iSEEu_1.6.0.zip

macOS 10.13 (High Sierra) iSEEu_1.6.0.tgz

Source Repository git clone https://git.bioconductor.org/packages/iSEEu

Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/iSEEu

Bioc Package Browser https://code.bioconductor.org/browse/iSEEu/

Package Short Url https://bioconductor.org/packages/iSEEu/

Package Downloads Report Download Stats

Old Source Packages for BioC 3.14 Source Archive