gpuMagic

This package is for version 3.14 of Bioconductor; for the stable, up-to-date release version, see gpuMagic.

An openCL compiler with the capacity to compile R functions and run the code on GPU

Bioconductor version: 3.14

The package aims to help users write openCL code with little or no effort. It is able to compile an user-defined R function and run it on a device such as a CPU or a GPU. The user can also write and run their openCL code directly by calling .kernel function.

Author: Jiefei Wang

Maintainer: Jiefei Wang <szwjf08 at gmail.com>

Citation (from within R, enter citation("gpuMagic")):

Installation

To install this package, start R (version "4.1") and enter:


if (!require("BiocManager", quietly = TRUE))
 install.packages("BiocManager")
BiocManager::install("gpuMagic")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("gpuMagic")

Customized_opencl_code HTML R Script

quickStart HTML R Script

Reference Manual PDF

NEWS Text

Need some help? Ask on the Bioconductor Support site!

Details

biocViews Infrastructure, Software

Version 1.10.0

In Bioconductor since BioC 3.9 (R-3.6) (5 years)

License GPL-3

Depends R (>= 3.6.0), methods, utils

Imports Deriv, DescTools, digest, pryr, stringr, BiocGenerics

System Requirements 1. C++11, 2. a graphic driver or a CPU SDK. 3. ICD loader For Windows user, an ICD loader is required at C:/windows/system32/OpenCL.dll (Usually it is installed by the graphic driver). For Linux user (Except mac): ocl-icd-opencl-dev package is required. For Mac user, no action is needed for the system has installed the dependency. 4. GNU make

URL

Bug Reports https://github.com/Jiefei-Wang/gpuMagic/issues

Suggests testthat, knitr, rmarkdown, BiocStyle

Linking To Rcpp

Enhances

Depends On Me

Imports Me

Suggests Me

Links To Me

Build Report Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package gpuMagic_1.10.0.tar.gz

Windows Binary gpuMagic_1.10.0.zip

macOS 10.13 (High Sierra) gpuMagic_1.10.0.tgz

Source Repository git clone https://git.bioconductor.org/packages/gpuMagic

Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/gpuMagic

Bioc Package Browser https://code.bioconductor.org/browse/gpuMagic/

Package Short Url https://bioconductor.org/packages/gpuMagic/

Package Downloads Report Download Stats

Old Source Packages for BioC 3.14 Source Archive