flowStats

This package is for version 3.14 of Bioconductor; for the stable, up-to-date release version, see flowStats.

Statistical methods for the analysis of flow cytometry data

Bioconductor version: 3.14

Methods and functionality to analyse flow data that is beyond the basic infrastructure provided by the flowCore package.

Author: Florian Hahne, Nishant Gopalakrishnan, Alireza Hadj Khodabakhshi, Chao-Jen Wong, Kyongryun Lee

Maintainer: Greg Finak <greg at ozette.ai>, Mike Jiang <mike at ozette.ai>, Jake Wagner <jpwagner at fhcrc.org>

Citation (from within R, enter citation("flowStats")):

Installation

To install this package, start R (version "4.1") and enter:


if (!require("BiocManager", quietly = TRUE))
 install.packages("BiocManager")
BiocManager::install("flowStats")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("flowStats")

flowStats Overview PDF R Script

Reference Manual PDF

NEWS Text

Need some help? Ask on the Bioconductor Support site!

Details

biocViews CellBasedAssays, FlowCytometry, ImmunoOncology, Software

Version 4.6.0

In Bioconductor since BioC 2.4 (R-2.9) (15 years)

License Artistic-2.0

Depends R (>= 3.0.2)

Imports BiocGenerics, MASS, flowCore(>= 1.99.6), flowWorkspace, ncdfFlow(>= 2.19.5), flowViz, fda (>= 2.2.6), Biobase, methods, grDevices, graphics, stats, cluster, utils, KernSmooth, lattice, ks, RColorBrewer, rrcov

System Requirements

URL http://www.github.com/RGLab/flowStats

Bug Reports http://www.github.com/RGLab/flowStats/issues

Suggests xtable, testthat, openCyto, ggcyto, ggridges

Linking To

Enhances RBGL, graph

Depends On Me flowVS, highthroughputassays

Imports Me openCyto

Suggests Me cydar, flowCore, flowTime, flowViz, ggcyto, ncdfFlow

Links To Me

Build Report Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package flowStats_4.6.0.tar.gz

Windows Binary flowStats_4.6.0.zip

macOS 10.13 (High Sierra) flowStats_4.6.0.tgz

Source Repository git clone https://git.bioconductor.org/packages/flowStats

Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/flowStats

Bioc Package Browser https://code.bioconductor.org/browse/flowStats/

Package Short Url https://bioconductor.org/packages/flowStats/

Package Downloads Report Download Stats

Old Source Packages for BioC 3.14 Source Archive