flowGraph

This package is for version 3.14 of Bioconductor; for the stable, up-to-date release version, see flowGraph.

Identifying differential cell populations in flow cytometry data accounting for marker frequency

Bioconductor version: 3.14

Identifies maximal differential cell populations in flow cytometry data taking into account dependencies between cell populations; flowGraph calculates and plots SpecEnr abundance scores given cell population cell counts.

Author: Alice Yue [aut, cre]

Maintainer: Alice Yue <aya43 at sfu.ca>

Citation (from within R, enter citation("flowGraph")):

Installation

To install this package, start R (version "4.1") and enter:


if (!require("BiocManager", quietly = TRUE))
 install.packages("BiocManager")
BiocManager::install("flowGraph")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("flowGraph")

flowGraph HTML R Script

Reference Manual PDF

NEWS Text

Need some help? Ask on the Bioconductor Support site!

Details

biocViews CellBasedAssays, FlowCytometry, ImmunoOncology, Software, StatisticalMethod, Visualization

Version 1.2.0

In Bioconductor since BioC 3.13 (R-4.1) (3 years)

License Artistic-2.0

Depends R (>= 4.1)

Imports effsize, furrr, future, purrr, ggiraph, ggrepel, ggplot2, igraph, Matrix, matrixStats, stats, utils, visNetwork, htmlwidgets, grDevices, methods, stringr, stringi, Rdpack, data.table (>= 1.9.5), gridExtra

System Requirements

URL https://github.com/aya49/flowGraph

Bug Reports https://github.com/aya49/flowGraph/issues

Suggests BiocStyle, knitr, rmarkdown, testthat (>= 2.1.0)

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