flowAI

This package is for version 3.14 of Bioconductor; for the stable, up-to-date release version, see flowAI.

Automatic and interactive quality control for flow cytometry data

Bioconductor version: 3.14

The package is able to perform an automatic or interactive quality control on FCS data acquired using flow cytometry instruments. By evaluating three different properties: 1) flow rate, 2) signal acquisition, 3) dynamic range, the quality control enables the detection and removal of anomalies.

Author: Gianni Monaco, Hao Chen

Maintainer: Gianni Monaco <mongianni1 at gmail.com>

Citation (from within R, enter citation("flowAI")):

Installation

To install this package, start R (version "4.1") and enter:


if (!require("BiocManager", quietly = TRUE))
 install.packages("BiocManager")
BiocManager::install("flowAI")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("flowAI")

Automatic and GUI methods to do quality control on Flow cytometry Data HTML R Script

Reference Manual PDF

NEWS Text

Need some help? Ask on the Bioconductor Support site!

Details

biocViews BiomedicalInformatics, FlowCytometry, ImmunoOncology, QualityControl, Software

Version 1.24.0

In Bioconductor since BioC 3.3 (R-3.3) (8 years)

License GPL (>= 2)

Depends R (>= 3.6)

Imports ggplot2, flowCore, plyr, changepoint, knitr, reshape2, RColorBrewer, scales, methods, graphics, stats, utils, rmarkdown

System Requirements

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Build Report Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package flowAI_1.24.0.tar.gz

Windows Binary flowAI_1.24.0.zip (32- & 64-bit)

macOS 10.13 (High Sierra) flowAI_1.24.0.tgz

Source Repository git clone https://git.bioconductor.org/packages/flowAI

Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/flowAI

Bioc Package Browser https://code.bioconductor.org/browse/flowAI/

Package Short Url https://bioconductor.org/packages/flowAI/

Package Downloads Report Download Stats

Old Source Packages for BioC 3.14 Source Archive