drawProteins

This package is for version 3.14 of Bioconductor; for the stable, up-to-date release version, see drawProteins.

Package to Draw Protein Schematics from Uniprot API output

Bioconductor version: 3.14

This package draws protein schematics from Uniprot API output. From the JSON returned by the GET command, it creates a dataframe from the Uniprot Features API. This dataframe can then be used by geoms based on ggplot2 and base R to draw protein schematics.

Author: Paul Brennan [aut, cre]

Maintainer: Paul Brennan <brennanpincardiff at gmail.com>

Citation (from within R, enter citation("drawProteins")):

Installation

To install this package, start R (version "4.1") and enter:


if (!require("BiocManager", quietly = TRUE))
 install.packages("BiocManager")
BiocManager::install("drawProteins")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("drawProteins")

Using drawProteins HTML R Script

Using extract_transcripts in drawProteins HTML R Script

Reference Manual PDF

NEWS Text

LICENSE Text

Need some help? Ask on the Bioconductor Support site!

Details

biocViews FunctionalPrediction, Proteomics, Software, Visualization

Version 1.14.0

In Bioconductor since BioC 3.7 (R-3.5) (6 years)

License MIT + file LICENSE

Depends R (>= 4.0)

Imports ggplot2, httr, dplyr, readr, tidyr

System Requirements

URL https://github.com/brennanpincardiff/drawProteins

Bug Reports https://github.com/brennanpincardiff/drawProteins/issues/new

Suggests covr, testthat, knitr, rmarkdown, BiocStyle

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Build Report Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package drawProteins_1.14.0.tar.gz

Windows Binary drawProteins_1.14.0.zip

macOS 10.13 (High Sierra) drawProteins_1.14.0.tgz

Source Repository git clone https://git.bioconductor.org/packages/drawProteins

Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/drawProteins

Bioc Package Browser https://code.bioconductor.org/browse/drawProteins/

Package Short Url https://bioconductor.org/packages/drawProteins/

Package Downloads Report Download Stats

Old Source Packages for BioC 3.14 Source Archive